Package picard.sam

Class FlowBasedDuplicationMetrics

java.lang.Object
htsjdk.samtools.metrics.MetricBase

public class FlowBasedDuplicationMetrics extends DuplicationMetrics
  • Field Details

    • UNPAIRED_WITH_TLEN

      public long UNPAIRED_WITH_TLEN
    • UNPAIRED_DUPS_WITHOUT_TLEN

      public long UNPAIRED_DUPS_WITHOUT_TLEN
    • UNPAIRED_DUPS_WITH_TLEN

      public long UNPAIRED_DUPS_WITH_TLEN
    • UNPAIRED_DUP_RATE_WITHOUT_TLEN

      public Double UNPAIRED_DUP_RATE_WITHOUT_TLEN
      The fraction of duplicated reads out of all reads with exact fragment length unknown
    • UNPAIRED_DUP_RATE_WITH_TLEN

      public Double UNPAIRED_DUP_RATE_WITH_TLEN
      The fraction of duplicated reads out of all reads with exact fragment length known
  • Constructor Details

    • FlowBasedDuplicationMetrics

      public FlowBasedDuplicationMetrics()
  • Method Details