Class ReadBaseStratification.LongShortHomopolymerStratifier

java.lang.Object
picard.sam.SamErrorMetric.ReadBaseStratification.LongShortHomopolymerStratifier
All Implemented Interfaces:
ReadBaseStratification.RecordAndOffsetStratifier<ReadBaseStratification.LongShortHomopolymer>
Enclosing class:
ReadBaseStratification

public static class ReadBaseStratification.LongShortHomopolymerStratifier extends Object implements ReadBaseStratification.RecordAndOffsetStratifier<ReadBaseStratification.LongShortHomopolymer>
Stratify bases according to the type of Homopolymer that they belong to (repeating element, final reference base and whether the length is "long" or not). Read direction and only the preceding bases are taken into account.