Package picard.arrays.illumina
Class IlluminaBPMLocusEntry
java.lang.Object
picard.arrays.illumina.IlluminaBPMLocusEntry
A simple class to represent a locus entry in an Illumina Bead Pool Manifest (BPM) file
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Constructor Details
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IlluminaBPMLocusEntry
public IlluminaBPMLocusEntry()
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Method Details
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getVersion
public int getVersion() -
getIlmnId
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getName
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getIndex
public int getIndex() -
getIlmnStrand
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getSnp
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getChrom
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getPloidy
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getSpecies
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getMapInfo
public int getMapInfo() -
getCustomerStrand
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getAddressA
public int getAddressA() -
getAlleleAProbeSeq
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getAddressB
public int getAddressB() -
getAlleleBProbeSeq
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getGenomeBuild
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getSource
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getSourceVersion
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getSourceStrand
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getSourceSeq
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getTopGenomicSeq
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getExpClusters
public int getExpClusters() -
isIntensityOnly
public boolean isIntensityOnly() -
getAssayType
public int getAssayType() -
getFracA
public float getFracA() -
getFracC
public float getFracC() -
getFracT
public float getFracT() -
getFracG
public float getFracG() -
getRefStrand
public htsjdk.tribble.annotation.Strand getRefStrand() -
getNormalizationId
public int getNormalizationId()
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