Package picard.arrays

Class CollectArraysVariantCallingMetrics.ArraysControlCodesSummaryMetrics

java.lang.Object
htsjdk.samtools.metrics.MetricBase
picard.arrays.CollectArraysVariantCallingMetrics.ArraysControlCodesSummaryMetrics
Enclosing class:
CollectArraysVariantCallingMetrics

@DocumentedFeature(groupName="Metrics", summary="Metrics") public static class CollectArraysVariantCallingMetrics.ArraysControlCodesSummaryMetrics extends htsjdk.samtools.metrics.MetricBase
  • Field Summary

    Fields
    Modifier and Type
    Field
    Description
    Grouping categories for controls.
    Various control intensities that are present on the infinium chips.
    int
    The green intensity value for the control.
    int
    The red intensity value for the control.
  • Constructor Summary

    Constructors
    Constructor
    Description
     
  • Method Summary

    Modifier and Type
    Method
    Description
    static String
     

    Methods inherited from class htsjdk.samtools.metrics.MetricBase

    equals, hashCode, toString

    Methods inherited from class java.lang.Object

    clone, finalize, getClass, notify, notifyAll, wait, wait, wait
  • Field Details

    • CONTROL

      public String CONTROL
      Various control intensities that are present on the infinium chips.
      See Also:
    • CATEGORY

      public String CATEGORY
      Grouping categories for controls.
    • RED

      public int RED
      The red intensity value for the control.
    • GREEN

      public int GREEN
      The green intensity value for the control.
  • Constructor Details

    • ArraysControlCodesSummaryMetrics

      public ArraysControlCodesSummaryMetrics()
  • Method Details

    • getFileExtension

      public static String getFileExtension()