Package picard.fingerprint
Enum Class DiploidGenotype
- All Implemented Interfaces:
Serializable
,Comparable<DiploidGenotype>
,Constable
A genotype produced by one of the concrete implementations of AbstractAlleleCaller.
DO NOT ADD TO OR REORDER THIS ENUM AS THAT WOULD BREAK THE GELI FILE FORMAT.
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Nested Class Summary
Nested classes/interfaces inherited from class java.lang.Enum
Enum.EnumDesc<E extends Enum<E>>
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Enum Constant Summary
Enum Constants -
Method Summary
Modifier and TypeMethodDescriptionstatic DiploidGenotype
fromBases
(byte[] bases) Converts a pair of bases into a DiploidGenotype regardless of base order or casestatic DiploidGenotype
fromBases
(byte base1, byte base2) Converts a pair of bases into a DiploidGenotype regardless of base order or casebyte
byte
boolean
boolean
static boolean
isValidBase
(byte base) static DiploidGenotype
Returns the enum constant of this class with the specified name.static DiploidGenotype[]
values()
Returns an array containing the constants of this enum class, in the order they are declared.
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Enum Constant Details
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AA
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AC
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AG
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AT
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CC
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CG
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CT
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GG
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GT
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TT
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Method Details
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values
Returns an array containing the constants of this enum class, in the order they are declared.- Returns:
- an array containing the constants of this enum class, in the order they are declared
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valueOf
Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum class has no constant with the specified nameNullPointerException
- if the argument is null
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fromBases
Converts a pair of bases into a DiploidGenotype regardless of base order or case -
fromBases
Converts a pair of bases into a DiploidGenotype regardless of base order or case -
isValidBase
public static boolean isValidBase(byte base) - Returns:
- true if this is a valid base, i.e. one of [ACGTacgt]
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getAllele1
public byte getAllele1() -
getAllele2
public byte getAllele2() -
isHeterozygous
public boolean isHeterozygous() -
isHomomozygous
public boolean isHomomozygous()
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