Package picard.analysis
Interface CollectMultipleMetrics.ProgramInterface
- All Known Implementing Classes:
CollectMultipleMetrics.Program
- Enclosing class:
- CollectMultipleMetrics
public static interface CollectMultipleMetrics.ProgramInterface
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Method Summary
Modifier and TypeMethodDescriptionmakeInstance
(String outbase, String outext, File input, File reference, Set<MetricAccumulationLevel> metricAccumulationLevel, File dbSnp, File intervals, File refflat, Set<String> ignoreSequence) default SinglePassSamProgram
makeInstance
(String outbase, String outext, File input, File reference, Set<MetricAccumulationLevel> metricAccumulationLevel, File dbSnp, File intervals, File refflat, Set<String> ignoreSequence, boolean includeUnpaired) By default, this method calls themakeInstance(String, String, File, File, Set, File, File, File, Set)
method without 'includeUnpaired' parameter.default boolean
default boolean
default boolean
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Method Details
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makeInstance
default SinglePassSamProgram makeInstance(String outbase, String outext, File input, File reference, Set<MetricAccumulationLevel> metricAccumulationLevel, File dbSnp, File intervals, File refflat, Set<String> ignoreSequence, boolean includeUnpaired) By default, this method calls themakeInstance(String, String, File, File, Set, File, File, File, Set)
method without 'includeUnpaired' parameter. -
makeInstance
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needsReferenceSequence
default boolean needsReferenceSequence() -
needsRefflatFile
default boolean needsRefflatFile() -
supportsMetricAccumulationLevel
default boolean supportsMetricAccumulationLevel()
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