Modifier and Type | Method and Description |
---|---|
SBMLDocument |
SBMLDocument.cloneObject()
Creates and returns a deep copy of this
SBMLDocument object. |
SBMLDocument |
SBMLValidator.getDocument()
Returns the current SBML document in use by this validator.
|
SBMLDocument |
SBMLConverter.getDocument()
Returns the SBML document that is the subject of the conversions.
|
SBMLDocument |
SBasePlugin.getSBMLDocument()
Returns the
SBMLDocument object containing this object instance. |
SBMLDocument |
SBase.getSBMLDocument()
Returns the
SBMLDocument object containing this object instance. |
static SBMLDocument |
libsbml.readSBML(java.lang.String filename)
Reads an SBML document from the given file.
|
SBMLDocument |
SBMLReader.readSBML(java.lang.String filename)
Reads an SBML document from the given file.
|
static SBMLDocument |
libsbml.readSBMLFromFile(java.lang.String filename)
Reads an SBML document from the given file.
|
SBMLDocument |
SBMLReader.readSBMLFromFile(java.lang.String filename)
Reads an SBML document from the given file.
|
static SBMLDocument |
libsbml.readSBMLFromString(java.lang.String xml)
Reads an SBML document from a text string.
|
SBMLDocument |
SBMLReader.readSBMLFromString(java.lang.String xml)
Reads an SBML document from a text string.
|
SBMLDocument |
SBMLResolverRegistry.resolve(java.lang.String uri)
Resolves the document for the given URI.
|
SBMLDocument |
SBMLResolver.resolve(java.lang.String uri)
Resolves the document for the given URI.
|
SBMLDocument |
SBMLFileResolver.resolve(java.lang.String uri)
Resolves the document for the given URI.
|
SBMLDocument |
SBMLResolverRegistry.resolve(java.lang.String uri,
java.lang.String baseUri)
Resolves the document for the given URI.
|
SBMLDocument |
SBMLResolver.resolve(java.lang.String uri,
java.lang.String baseUri)
Resolves the document for the given URI.
|
SBMLDocument |
SBMLFileResolver.resolve(java.lang.String uri,
java.lang.String baseUri)
Resolves the document for the given URI.
|
Modifier and Type | Method and Description |
---|---|
int |
SBMLResolverRegistry.addOwnedSBMLDocument(SBMLDocument doc)
Adds the given
SBMLDocument to the registry of SBML documents that will need to be deleted. |
void |
SBMLExtensionRegistry.disableUnusedPackages(SBMLDocument doc)
Disables unused packages.
|
void |
LayoutExtension.enableL2NamespaceForDocument(SBMLDocument doc)
Adds the L2 Namespace to the document and enables the extension.
|
void |
RenderExtension.enableL2NamespaceForDocument(SBMLDocument doc)
Adds the L2 Namespace to the document and enables the extension.
|
void |
SBMLExtensionRegistry.enableL2NamespaceForDocument(SBMLDocument doc)
Enables package extensions that support serialization to SBML annotations.
|
boolean |
LayoutExtension.isInUse(SBMLDocument doc)
Determines whether this extension is being used by the given
SBMLDocument |
boolean |
RenderExtension.isInUse(SBMLDocument doc)
Determines whether this extension is being used by the given
SBMLDocument |
boolean |
SBMLExtension.isInUse(SBMLDocument doc)
Indicates whether this extension is being used by the given
SBMLDocument . |
int |
SBMLValidator.setDocument(SBMLDocument doc)
Sets the current SBML document to the given
SBMLDocument object. |
int |
SBMLReactionConverter.setDocument(SBMLDocument doc)
Sets the current SBML document to the given
SBMLDocument object. |
int |
SBMLConverter.setDocument(SBMLDocument doc)
Sets the SBML document to be converted.
|
long |
SBMLValidator.validate(SBMLDocument d)
Validates the given
SBMLDocument object. |
boolean |
SBMLWriter.writeSBML(SBMLDocument d,
OStream stream)
Writes the given SBML document to the output stream.
|
static int |
libsbml.writeSBML(SBMLDocument d,
java.lang.String filename)
Writes the given SBML document
d to the file named by filename . |
boolean |
SBMLWriter.writeSBML(SBMLDocument d,
java.lang.String filename)
Writes the given SBML document to filename.
|
static int |
libsbml.writeSBMLToFile(SBMLDocument d,
java.lang.String filename)
Writes the given SBML document
d to the file filename . |
boolean |
SBMLWriter.writeSBMLToFile(SBMLDocument d,
java.lang.String filename)
Writes the given SBML document to filename.
|
static java.lang.String |
libsbml.writeSBMLToString(SBMLDocument d)
Writes the given SBML document
d to an in-memory string and returns a
pointer to it. |
java.lang.String |
SBMLWriter.writeSBMLToString(SBMLDocument d)
Writes the given SBML document to an in-memory string and returns a
pointer to it.
|
Constructor and Description |
---|
SBMLDocument(SBMLDocument orig)
Copy constructor; creates a copy of this
SBMLDocument . |